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24, chemin de Borde Rouge –Auzeville – CS52627
31326 Castanet Tolosan CEDEX - France

Dernière mise à jour : Mai 2018


Laboratory of Plant-Microbe Interactions - LIPM

Laboratory of Plant-Microbe Interactions



  • Le Cam, B., Sargent, D., Gouzy, J., Amselem, J., Bellanger, M.-N., Bouchez, O., Brown, S., Caffier, V., De Gracia, M., Debuchy, R., Duvaux, L., Payen, T., Sannier, M., Shiller, J., Collemare, J., Lemaire, C. (2019). Population Genome Sequencing of the Scab Fungal Species Venturia inaequalis, Venturia pirina, Venturia aucupariae and Venturia asperata. G3 - Genes Genomes Genetics, 9 (8), 2405-2414. , DOI : 10.1534/g3.119.400047
  • Rubio, B., Cosson, P., Caballero, M., Revers, F., Bergelson, J., Roux, F., Schurdi-Levraud, V. (2019). Genome-wide association study reveals new loci involved in Arabidopsis thaliana and Turnip mosaic virus (TuMV) interactions in the field. New Phytologist, 221 (4), 2026-2038. , DOI : 10.1111/nph.15507
  • Koutsovoulos, G., Poullet, M., Ashry, A. E., kozlowski, D., Sallet, E., Da Rocha, M., Martin-Jimenez, C., Perfus-Barbeoch, L., Frey, J.-E., Ahrens, C., Kiewnick, S. (Co-premier auteur), Danchin, E. (Auteur de correspondance) (2019). The polyploid genome of the mitotic parthenogenetic root-knot nematode Meloidogyne enterolobii. BioRxiv, 1-16. , DOI : 10.1101/586818
  • Reynolds, D., Baret, F., Welcker, C., Bostrom, Ball, Cellini, F., Lorence, A., Chawade, A., Khafif, M., Noshita, K., Mueller-Linow, M., Zhou, J., Tardieu, F. (2019). What is cost-efficient phenotyping? Optimizing costs for different scenarios. Plant Science, 282, 14-22. , DOI : 10.1016/j.plantsci.2018.06.015
  • Tan, S., Debellé, F., Gamas, P., Frugier, F., Brault, M. (2019). Diversification of cytokinin phosphotransfer signaling genes in Medicago truncatula and other legume genomes. BMC Genomics, 20. , DOI : 10.1186/s12864-019-5724-z 
  • Dussert, Y., Mazet, I. D., Couture, C., Gouzy, J., Piron, M.-C., Kuchly, C., Bouchez, O., Rispe, C., Mestre, P., Delmotte, F. (2019). A high-quality grapevine downy mildew genome assembly reveals rapidly evolving and lineage-specific putative host adaptation genes. Genome Biology and Evolution, 11 (3), 954-969. , DOI : 10.1093/gbe/evz048
  • Petit, Y., Degrave, A., Meyer, M., Blaise, F., Ollivier, B., Marais, C.-L., Jauneau, A., Audran, C., RIVAS, S., Veneault-Fourrey, C., Brun, H., Rouxel, T., Fudal, I., Balesdent, M.-H. (2019). A two genes - for - one gene interaction between Leptosphaeria maculans and Brassica napus . New Phytologist, 223 (1), 397-411. , DOI : 10.1111/nph.15762
  • Gallie, J., Bertels, F., Remigi, P., Ferguson, G. C., Nestmann, S., Rainey, P. B. (2019). Repeated Phenotypic Evolution by Different Genetic Routes in Pseudomonas fluorescens SBW25. Molecular Biology and Evolution, 36 (5), 1071-1085. , DOI : 10.1093/molbev/msz040
  • Buendia Martin, L. F., Maillet, F., O'Connor, D., van de kerkhove, Q., Danoun, S., Gough, C., Lefebvre, B., Bensmihen, S. (2019). Lipo-chitooligosaccharides promote lateral root formation and modify auxin homeostasis in Brachypodium distachyon . New Phytologist, 221 (4), 2190-2202. , DOI : 10.1111/nph.15551
  • Meline, V., Delage, W., Brin, C., Li Marchetti, C., Sochard, D., Arlat, M., Rousseau, C., Darrasse, A., Briand, M., Lebreton, G., Portier, P., Fisher, M., Durand, K., Jacques, M. A., Belin, E., Boureau, T. (Auteur de correspondance) (2019). Role of the acquisition of a Type 3 Secretion System in the emergence of novel pathogenic strains of Xanthomonas . Molecular Plant Pathology, 20, 33-50. , DOI : 10.1111/mpp.12737
  • Rey, T., Andre, O., Nars, A., Dumas, B., Gough, C., Bottin, A., Jacquet, C. (2019). Lipo-chitooligosaccharide signalling blocks a rapid pathogen-induced ROS burst without impeding immunity. New Phytologist, 221 (2), 743-749. , DOI : 10.1111/nph.15574
  • Hubner, S., Bercovich, N., Todesco, M., Mandel, J. R., Odenheimer, J., Ziegler, E., Lee, J. S., Baute, G. J., Owens, G. L., Grassa, C. J., Ebert, D. P., Ostevik, K. L., Moyers, B. T., Yakimowski, S., Masalia, R. R., Gao, L., Calic, I., Bowers, J. E., Kane, N. C., Swanevelder, D. Z. H., Kubach, T., Munos, S., Langlade, N., Burke, J. M., Rieseberg, L. H. (2019). Sunflower pan-genome analysis shows that hybridization altered gene content and disease resistance. Nature Plants, 5 (1), 54-62. , DOI : 10.1038/s41477-018-0329-0
  • Sorroche, F., Walch, M., Zou, L., Rengel, D., Maillet, F., Gibelin-Viala, C., Poinsot, V., Chervin, C., Masson‐Boivin, C., Gough, C., Batut, J., Garnerone, A. M. (2019). Endosymbiotic Sinorhizobium meliloti modulate Medicago root susceptibility to secondary infection via ethylene. New Phytologist, 223 (3), 1505-1515. , DOI : 10.1111/nph.15883
  • Genre, A., Timmers, T. (2019). The symbiotic role of the actin filament cytoskeleton. New Phytologist, 221 (2), 611-613. , DOI : 10.1111/nph.15506
  • Pecrix, Y., Buendia Martin, L. F., Penouilh-Suzette, C., Marechaux, M., Legrand, L., Bouchez, O., Rengel, D., Gouzy, J., Cottret, L., Vear, F., Godiard, L. (2019). Sunflower resistance to multiple downy mildew pathotypes revealed by recognition of conserved effectors of the oomycete Plasmopara halstedii. Plant Journal, 97 (4), 730-748. , DOI : 10.1111/tpj.14157
  • Liu, C.-W., Breakspear, A., Stacey, N., Findlay, K., Nakashima, J., Ramakrishnan, K., Liu, M., Xie, F., Endre, G., De Carvalho-Niebel, F., Oldroyd, G. E. D., Udvardi, M. K., Fournier, J., Murray, J. D. (2019). A protein complex required for polar growth of rhizobial infection threads. Nature Communications, 10. , DOI : 10.1038/s41467-019-10029-y
  • Remigi, P. (Auteur de correspondance), Ferguson, G. C., McConnell, E., De Monte, S., Rogers, D. W., Rainey, P. (Auteur de correspondance) (2019). Ribosome Provisioning Activates a Bistable Switch Coupled to Fast Exit from Stationary Phase. Molecular Biology and Evolution, 36 (5), 1056 - 1070. , DOI : 10.1093/molbev/msz041
  • Cerutti, A., Jauneau, A., Laufs, P., Leonhardt, N., Schattat, M., Berthomé, R., Routaboul, J.-M., Noël, L. (2019). Mangroves in the leaves: anatomy, physiology, and immunity of epithemal hydathodes. Annual Review of Phytopathology. , DOI : 10.1146/annurev-phyto-082718-100228
  • Ruiz, B., Le Scornet, A., Sauviac, L., Rémy, A., Bruand, C., Meilhoc, E. (2019). The Nitrate Assimilatory Pathway in Sinorhizobium meliloti: Contribution to NO Production. Frontiers in Microbiology, 10. , DOI : 10.3389/fmicb.2019.01526
  • Mangin, B., Rincent, R., Rabier, C.-E., Moreau, L., Goudemand-Dugue, E. (2019). Training set optimization of genomic prediction by means of EthAcc. Plos One, 14 (2). , DOI : 10.1371/journal.pone.0205629
  • Frachon, L., mayjonade, B., Bartoli, C., Hautekèete, N.-C., Roux, F. (Auteur de correspondance) (2019). Adaptation to Plant Communities across the Genome of Arabidopsis thaliana. Molecular Biology and Evolution, 36 (7), 1442-1456. , DOI : 10.1093/molbev/msz078
  • Remigi, P., Masson, C., Rocha, E. P. (2019). Experimental Evolution as a Tool to Investigate Natural Processes and Molecular Functions. Trends in Microbiology, 27 (7), 623-634. , DOI : 10.1016/j.tim.2019.02.003
  • El Amrani, A., Couee, I., Berthomé, R., Ramel, F., Gouesbet, G., Sulmon, C. (2019). Involvement of polyamines in sucrose-induced tolerance to atrazine-mediated chemical stress in Arabidopsis thaliana. Journal of Plant Physiology, 238, 1-11. , DOI : 10.1016/j.jplph.2019.04.012
  • Peyraud, R., Mbengue, M., Barbacci, A., Raffaele, S. (2019). Intercellular cooperation in a fungal plant pathogen facilitates host colonization. Proceedings of the National Academy of Sciences of the United States of America, 116 (8), 3193-3201. , DOI : 10.1073/pnas.1811267116
  • Grund, E., Tremousaygue, D., Deslandes, L. (2019). Plant NLRs with integrated domains: Unity makes strength. Plant Physiology, 179 (4), 1227-1235. , DOI : 10.1104/pp.18.01134
  • Gautrat, P., Mortier, V., Laffont, C., De Keyser, A., Fromentin, J., Frugier, F., Goormachtig, S. (2019). Unraveling new molecular players involved in the autoregulation of nodulation in Medicago truncatula. Journal of Experimental Botany, 70 (4), 1407-1417. , DOI : 10.1093/jxb/ery465
  • Pfeilmeier, S., George, J., Morel, A. A., Roy, S., Smoker, M., Stransfeld, L., Downie, J. A., Peeters, N., Malone, J. G., Zipfel, C. (2019). Expression of the Arabidopsis thaliana immune receptor EFR in Medicago truncatula reduces infection by a root pathogenic bacterium, but not nitrogen-fixing rhizobial symbiosis. Plant Biotechnology Journal, 17 (3), 569-579. , DOI : 10.1111/pbi.12999
  • Gibelin-Viala, C., Amblard, E., Puech-Pages, V., Bonhomme, M., Garcia, M., Bascaules-Bedin, A., Fliegmann, J., Wen, J., Mysore, K. S., Le Signor, C., Jacquet, C., Gough, C. (2019). The Medicago truncatula LysM receptor-like kinase LYK9 plays a dual role in immunity and the arbuscular mycorrhizal symbiosis. New Phytologist, 223 (3), 1516-1529. , DOI : 10.1111/nph.15891
  • Mazo-Molina, C., Mainiero, S., Hind, S. R., Kraus, C. M., Vachev, M., Maviane Macia, F., Lindeberg, M., Saha, S., Strickler, S. R., Feder, A., Giovannoni, J. J., Smart, C. D., Peeters, N., Martin, G. B. (2019). The Ptr1 Locus of Solanum lycopersicoides Confers Resistance to Race 1 Strains of Pseudomonas syringae pv. tomato and to Ralstonia pseudosolanacearum by Recognizing the Type III Effectors AvrRpt2 and RipBN. Molecular Plant-Microbe Interactions, 32 (8), 949-960. , DOI : 10.1094/MPMI-01-19-0018-R
  • Fernandez, O. (Auteur de correspondance), Urrutia Rosauro, M., Berton, T., Bernillon, S., Deborde, C., Jacob, D., Maucourt, M., Maury, P., Durufle, H., Gibon, Y., Langlade, N., Moing, A. (2019). Metabolomic characterization of sunflower leaf allows discriminating genotype groups or stress levels with a minimal set of metabolic markers. Metabolomics, 15 (4), 56. , DOI : 10.1007/s11306-019-1515-4
  • Rabier, C.-E., Mangin, B., Grusea, S. (2019). On the accuracy in high‐dimensional linear models and its application to genomic selection. Scandinavian Journal of Statistics, 46 (1), 289-313. , DOI : 10.1111/sjos.12352
  • Berrabah, F., Ratet, P., Gourion, B. (2019). Legume Nodules: Massive Infection in the Absence of Defense Induction. Molecular Plant-Microbe Interactions, 32 (1), 35-44. , DOI : 10.1094/MPMI-07-18-0205-FI
  • Dupuy, P., Sauviac, L., Bruand, C. (2019). Stress-inducible NHEJ in bacteria: function in DNA repair and acquisition of heterologous DNA. Nucleic Acids Research, 47 (3), 1335-1349. , DOI : 10.1093/nar/gky1212
  • Gosseau, F., Blanchet, N., Vares, D., Burger, P., Campergue, D., Colombet, C., Gody, L., Liévin, J.-F., Mangin, B., Tison, G., Vincourt, P., Casadebaig, P., Langlade, N. (2019). Heliaphen, an outdoor high-throughput phenotyping platform for genetic studies and crop modeling. Frontiers in Plant Science, 9, 1-19. , DOI : 10.3389/fpls.2018.01908
  • Buendia , L., Ribeyre, C., Bensmihen, S., Lefebvre, B. (2019). Brachypodium distachyon tar2l(hypo) mutant shows reduced root developmental response to symbiotic signal but increased arbuscular mycorrhiza. Plant Signaling and Behavior , DOI : 10.1080/15592324.2019.1651608
  • Bruand, C., Meilhoc, E. (2019). NO in plants: pro or anti senescence. Journal of Experimental Botany. , DOI : 10.1093/jxb/erz117
  • Baena, I., Pérez-Mendoza, D., Sauviac, L., Francesch, K., Martín, M., Rivilla, R., Bonilla, I., Bruand, C., Sanjuán, J., Lloret, J. (2019). A partner-switching system controls activation of mixed-linkage β-glucan synthesis by c-di-GMP in Sinorhizobium meliloti. Environmental Microbiology , DOI : 10.1111/1462-2920.14624
  • Bertrand, C., Thibessard, A., Bruand, C., Lecointe, F., Leblond, P. (2019). Bacterial NHEJ: a never ending story. Molecular Microbiology, 111 (5), 1139-1151. , DOI : 10.1111/mmi.14218
  • Sabbagh, C., Carrère, S., Lonjon, F., Vailleau, F., Macho, A. P., Génin, S., Peeters, N. (2019). Pangenomic type III effector database of the plant pathogenic Ralstonia spp. PeerJ, 7, 1-21. , DOI : 10.7717/peerj.7346 
  • Liu, C.-W., Breakspear, A., Guan, D., CERRI, M., Jackson, K., Jiang, S., Robson, F., Radhakrishnan, G. V., Roy, S., Bone, C., Stacey, N., Rogers, C., Trick, M., Niebel, A., Oldroyd, G. E., De Carvalho-Niebel, F., Murray, J. D. (2019). NIN Acts as a Network Hub Controlling a Growth Module Required for Rhizobial Infection. Plant Physiology, 179 (4), 1704-1722. , DOI : 10.1104/pp.18.01572
  • Badet, T., Léger, O., Barascud, M., Voisin, D., Sadon, P., Vincent, R., Le Ru, A., Balague, C., Roby, D., Raffaele, S. (2019). Expression polymorphism at the ARPC4 locus links the actin cytoskeleton with quantitative disease resistance to Sclerotinia sclerotiorum in Arabidopsis thaliana. New Phytologist, 222 (1), 480-496. , DOI : 10.1111/nph.15580 
  • Perrier, A., Barlet, X., Rengel, D., Prior, P., Poussier, S., Genin, S., Guidot, A. (2019). Spontaneous mutations in a regulatory gene induce phenotypic heterogeneity and adaptation of Ralstonia solanacearum to changing environments. Environmental Microbiology, 21 (8), 3140 - 3152. , DOI : 10.1111/1462-2920.14717
  • Chiang, T.-Y., Derbyshire, M. C., Denton-Giles, M., Hane, J. K., Chang, S., Mousavi-Derazmahalleh, M., Raffaele, S., Buchwaldt, L., Kamphuis, L. G. (2019). A whole genome scan of SNP data suggests a lack of abundant hard selective sweeps in the genome of the broad host range plant pathogenic fungus Sclerotinia sclerotiorum. Plos One, 14 (3), e0214201. , DOI : 10.1371/journal.pone.0214201


  • Chazalviel, M., Frainay, C., Poupin, N., Vinson, F., Merlet, B., Gloaguen, B., Cottret, L., Jourdan, F. (Auteur de correspondance) (2018). MetExploreViz: web component for interactive metabolic network visualization. Bioinformatics, 34 (2), 312-313
  • Gaudioso-Pedraza, R., Beck, M., Frances, L., Kirk, P., Ripodas, C., Niebel, A., Oldroyd, G. E. D., Benitez-Alfonso, Y., De Carvalho-Niebel, F. (2018). Callose-Regulated Symplastic Communication Coordinates Symbiotic Root Nodule Development. Current Biology, 28 (22), 3562-3577
  • Blanchet, N., Casadebaig, P., Debaeke, P., Durufle, H., Gody, L., Gosseau, F., Langlade, N., Maury, P. (2018). Data describing the eco-physiological responses of twenty-four sunflower genotypes to water deficit. Data in Brief, 21, 1296-1301
  • Islam, F., Wang, J., Farooq, M. A., Khan, M. S. S., Xu, L., Zhu, J., Zhao, M., Munos, S., Li, Q. X., Zhou, W. (2018). Potential impact of the herbicide 2,4-dichlorophenoxyacetic acid on human and ecosystems. Environment International, 111, 332-351. , DOI : 10.1016/j.envint.2017.10.020
  • Lahaye, M., Bouin, C., Barbacci, A., Le Gall, S., Foucat, L. (2018). Water and cell wall contributions to apple mechanical properties. Food Chemistry, 268, 386-394
  • Gough, C., Cottret, L., Lefebvre, B., Bono, J.-J. (2018). Evolutionary History of Plant LysM Receptor Proteins Related to Root Endosymbiosis. Frontiers in Plant Science, 9
  • Buhian, W., Bensmihen, S. (2018). Mini-Review: Nod Factor Regulation of Phytohormone Signaling and Homeostasis During Rhizobia-Legume Symbiosis. Frontiers in Plant Science, 9
  • Buendia Martin, L. F., Girardin, A., Wang, T., Cottret, L., Lefebvre, B. (2018). LysM Receptor-Like Kinase and LysM Receptor-Like Protein Families: An Update on Phylogeny and Functional Characterization. Frontiers in Plant Science, 9
  • Pecrix, Y., Penouilh-Suzette, C., Munos, S., Vear, F., Godiard, L. (2018). Ten Broad Spectrum Resistances to Downy Mildew Physically Mapped on the Sunflower Genome. Frontiers in Plant Science, 1-15
  • Frachon, L., Bartoli, C., Carrere, S., Bouchez, O., Chaubet, A., Gautier, M., Roby, D., Roux, F. (2018). A Genomic Map of Climate Adaptation in Arabidopsis thaliana at a Micro-Geographic Scale. Frontiers in Plant Science, 9
  • Kusch, S., Frantzeskakis, L., Thieron, H., Panstruga, R. (2018). Small RNAs from cereal powdery mildew pathogens may target host plant genes. Fungal Biology, 122 (11), 1050-1063
  • Daval, S., Belcour, A., Gazengel, K., Legrand, L., Gouzy, J., Cottret, L., Lebreton, L., Aigu, Y., Mougel, C., Manzanares-Dauleux, M.J. (2018) Computational analysis of the Plasmodiophora brassicae genome: mitochondrial sequence description and metabolic pathway database design. Genomic in press
  • Xia, Q., Saux, M., Ponnaiah, M., Gilard, F., Perreau, F., Huguet, S., Balzergue, S., Langlade, N., Bailly, C., Meimoun, P., Corbeau, F., El-Maarouf-Bouteau, H. (Auteur de correspondance) (2018). One way to achieve germination: common molecular mechanism induced by ethylene and after-ripening in Sunflower seeds. International Journal of Molecular Sciences, 19 (8)
  • Adiredjo, A. L., Casadebaig, P., Langlade, N., Lamaze, T., Grieu, P. (2018). Genetic Analysis of the Transpiration Control in Sunflower (Helianthus Annuus L) Subjected to Drought. Vegetos - International Journal of Plant Research, 31 (1)
  • Bartoli, C., Frachon, L., Barret, M., Rigal, M., Chauveau, C., Mayjonade, B., Zanchetta, C., Bouchez, O., Roby, D., Carrere, S., Roux, F. (2018). In situ relationships between microbiota and potential pathobiota in Arabidopsis thaliana. ISME Journal, 12 (8), 2024-2038
  • Garnerone, A. M., Sorroche, F., Zou, L., Mathieu-Demazière, C., Tian, C. F., Masson, C., Batut, J. (2018). NsrA, a Predicted β-Barrel Outer Membrane Protein Involved in Plant Signal Perception and the Control of Secondary Infection in Sinorhizobium meliloti. Journal of Bacteriology, 200 (11)
  • Morel, A., Peeters, N., Vailleau, F., Barberis, P., Jiang, G., Berthomé, R., Guidot, A. (2018). Plant Pathogenicity Phenotyping of Ralstonia solanacearum Strains. In: Medina, C, LopezBaena, FJ, dir., Host-Pathogen Interactions: Methods and Protocols (p. 223-239). Methods in Molecular Biology, 1734. Totowa, USA : Humana Press Inc. 332 p
  • Perrier, A., Barberis, P., Genin, S. (2018). Introduction of Genetic Material in Ralstonia solanacearum Through Natural Transformation and Conjugation. In: Medina, C, LopezBaena, FJ, dir., Host-Pathogen Interactions: Methods and Protocols (p. 201-207). Methods in Molecular Biology, 1734. Totowa, USA : Humana Press Inc. 332 p
  • Herrbach, V., Maillet, F., Bensmihen, S. (2018). Adapting the Lateral Root-Inducible System to Medicago truncatula. In: Root Development (p. 77-83). Methods in Molecular Biology (Chapter 5)
  • Lonjon, F., Peeters, N., Genin, S., Vailleau, F. (2018). In Vitro and In Vivo Secretion/Translocation Assays to Identify Novel Ralstonia solanacearum Type 3 Effectors. In: Medina, C, LopezBaena, FJ, dir., Host-Pathogen Interactions: Methods and Protocols (p. 209-222). Methods in Molecular Biology, 1734. Totowa, USA : Humana Press Inc. 332 p
  • Roux, B., Rodde, N., Moreau, S., Jardinaud, M.-F., Gamas, P. (2018). Laser Capture Micro-Dissection Coupled to RNA Sequencing: A Powerful Approach Applied to the Model Legume Medicago truncatula in Interaction with Sinorhizobium meliloti. In: Nobutoshi Yamaguchi, Plant Transcription Factors (p. 191-224). Methods in Molecular Biology (Chapter 12)
  • Perrier, A., Barlet, X., Peyraud, R., Rengel, D., Guidot, A., Genin, S. (2018). Comparative transcriptomic studies identify specific expression patterns of virulence factors under the control of the master regulator PhcA in the Ralstonia solanacearum species complex. Microbial Pathogenesis, 116, 273-278
  • Navaud, O., Barbacci, A., Taylor, A., Clarkson, J. P., Raffaele, S. (2018). Shifts in diversification rates and host jump frequencies shaped the diversity of host range among Sclerotiniaceae fungal plant pathogens. Molecular Ecology, 27 (5), 1309-1323
  • Morel, A., Guinard, J., lonjon, F., Sujeeun, L., Barberis, P., Genin, S., Vailleau, F., Daunay, M.-C., Dintinger, J., Poussier, S., Peeters, N., Wicker, E (2018). The eggplant AG91-25 recognizes the Type III-secreted effector RipAX2 to trigger resistance to bacterial wilt (Ralstonia solanacearum species complex). Molecular Plant Pathology, 19 (11), 2459-2472
  • Tang, N., Shahzad, Z., Lonjon, F., Loudet, O., Vailleau, F., Maurel, C. (2018). Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nature Communications, 9
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