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24, chemin de Borde Rouge –Auzeville – CS52627
31326 Castanet Tolosan CEDEX - France

Dernière mise à jour : Mai 2018


Laboratory of Plant-Microbe Interactions - LIPM

Laboratory of Plant-Microbe Interactions

Publications - Sunflower Genetics and Genomics


  • Calderón-González Á, Pouilly N, Muños S, Grand X, Coque M, Velasco L, Pérez-Vich B (2019) An SSR-SNP Linkage Map of the Parasitic Weed Orobanche cumana Wallr. Including a Gene for Plant Pigmentation. Front Plant Sci. 10: 797.
  • Fernandez O, Urrutia M, Berton T, Bernillon S, Deborde C, Jacob D, Maucourt M, Maury P, Duruflé H, Gibon Y, Langlade NB, Moing A (2019) Metabolomic characterization of sunflower leaf allows discriminating genotype groups or stress levels with a minimal set of metabolic markers. Metabolomics 15: 56.
  • Mangin B, Rincent R, Rabier CE, Moreau L, Goudemand-Dugue E (2019) Training set optimization of genomic prediction by means of EthAcc. PLoS One. 14:e0205629.
  • Hübner S, Bercovich N, Todesco M, Mandel JR, Odenheimer J, Ziegler E, Lee JS, Baute GJ, Owens GL,, Grassa CJ,, Ebert DP,, Ostevik KL,0, Moyers BT,, Yakimowski S, Masalia RR, Gao L, Ćalić I, Bowers JE, Kane NC,, Swanevelder DZH, Kubach T, Muños S, Langlade NB, Burke JM, Rieseberg LH (2019) Sunflower pan-genome analysis shows that hybridization altered gene content and disease resistance. Nat. Plants 1: 54-62.
  • Gosseau F, Blanchet N, Varès D, Burger P, Campergue D, Colombet C, Gody L, Liévin JF, Mangin B, Tison G, Vincourt P, Casadebaig P, Langlade N (2019) Heliaphen, an Outdoor High-Throughput Phenotyping Platform for Genetic Studies and Crop Modeling. Front Plant Sci. 9:1908.


  • Blanchet, N, Casadebaig, P, Debaeke, P, Duruflé, H, Gody, L, Gosseau, F, Langlade, NB, Maury, P. (2018) Data describing the eco-physiological responses of twenty-four sunflower genotypes to water deficit. Data Brief  21:1296-1301.
  • Rabier, C.E., Mangin, B., Grusea, S. (2018) On the accuracy in high-dimensional linear models and its application to genomic selection. Scandinavian Journal of Statistics. DOI: 10.1111/sjos.12352
  • Xia, Q., Saux, M., Ponnaiah, M., Gilard, F., Perreau, F., Huguet, S., Balzergue, S., Langlade, N., Bailly, C., Meimoun, P., Corbineau, F., El-Maarouf-Bouteau, H. (2018) One Way to Achieve Germination: Common Molecular Mechanism Induced by Ethylene and After-Ripening in Sunflower Seeds. International Journal of Molecular Sciences 19(8). pii: E2464. doi: 10.3390/ijms19082464.
  • Subrahmaniam, H., Libourel, C., Journet, E.P., Morel, J.B., Munos, S., Niebel, A., Raffaele, S., Roux, F. (2018) The genetics underlying natural variation of plant-plant interactions, a beloved but forgotten member of the family of biotic interactions. The Plant Journal 93:747-770.
  • Bonnafous, F., Fievet, G., Blanchet N., Boniface, M.C., Carrère, S., Gouzy,J., Legrand, L., Marage G., Bret-Mestries, E., Munos, S.; Pouilly, N., Vincourt, P., Langlade, N., Mangin, B. (2018) Comparison of GWAS models to identify non-additive genetic control of flowering time in sunflower hybrids. Theoretical and Applied Genetics 131:319-332


  • Bordat, A., Marchand, G., Langlade, N., Pouilly, N., Munos, S., Dechamp-Guillaume, G., Vincourt, P., Bret-Mestries, E. (2017) Different genetic architectures underlie crop responses to the same pathogen: the {Helianthus annuus * Phoma macdonaldii} interaction case for black stem disease and premature ripening. BMC Plant Biology Oct 19;17(1):167. doi: 10.1186/s12870-017-1116-1
  • Mangin B., Bonnafous F., Blanchet N., Boniface M.C., Bret-Mestries E., Carrère S., Cottret L., Legrand L., Marage G., Pegot-Espagnet P., Muños S., Pouilly N., Vear F., Vincourt P. and Langlade N. (2017) Genomic prediction of sunflower hybrids oil content. Front Plant Sci. 2017 Sep 21;8:1633. doi: 10.3389/fpls.2017.01633. eCollection 2017.
  • Duhnen, A., Gras, A., Teyssèdre, S., Romestant, M., Claustres, B., Daydé, J., Mangin, B. (2017) Genomic selection for yield and seed protein content in soybean: study of breeding program data and assessment of prediction accuracy. Crop Science Vol. 57 No. 3, p. 1325-1337 
  • Mangin, B., Casadebaig, P., Cadic, E., Blanchet, N., Boniface, M.C., Carrère, S., Gouzy, J., Legrand, L., Mayjonade, B., Pouilly, N., André, T., Coque, M., Piquemal, J., Romestant, M., Vincourt, P., Muños, S., Langlade, N.B. (2017) Genetic control of oil yield plasticity to combined abiotic stresses using a joint approach of crop modeling and genome-wide association. Plant, Cell & Environment Apr 18. doi: 10.1111/pce.12961.
  • Badouin H., Gouzy J., Grassa C.J., Murat F., Staton S.E., Cottret L., Lelandais-Brière C., Owens G.L., Carrère S., Mayjonade B., Legrand L., Gill N., Kane N.C., Bowers J.E., Hubner S., Bellec A., Bérard A., Bergès H., Blanchet N., Boniface M.C., Brunel D., Catrice O., Chaidir N., Claudel C., Donnadieu C., Faraut T., Fievet G., Helmstetter N., King M., Knapp S.J., Lai Z., Le Paslier M.C., Lippi Y., Lorenzon L., Mandel J.R., Marage G., Marchand G., Marquand E., Bret-Mestries E., Morien E., Nambeesan S., Nguyen T., Pegot-Espagnet P., Pouilly N., Raftis F., Sallet E., Schiex T., Thomas J., Vandecasteele C., Varès D., Vear F., Vautrin S., Crespi M., Mangin B., Burke J.M., Salse J., Muños S., Vincourt P., Rieseberg L.H., Langlade N.B. (2017) The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution. Nature 546:148-152.
  • Mangin, B., Pouilly, N., Boniface, M.C., Langlade, N.B., Vincourt, P., Vear, F., Muños, S. (2017) Molecular diversity in sunflower populations maintained as genetic resources is affected by multiplication processes and breeding for major traits. Theoretical and Applied Genetics 2017 Mar 2. doi: 10.1007/s00122-017-2872-x.
  • Debaeke P, Casadebaig P, Flénet F, Langlade NB (2016) Sunflower crop and climate change: vulnerability, adaptation, and mitigation potential from case-studies in Europe. OCL 24(1)


  • Fernandez, O., Urrutia, M., Bernillon, S., Giauffret, C., Tardieu, F., Le Gouis, J., Langlade, N., Charcosset, A., Moing, A., Gibon, Y. (2016) Fortune telling: metabolic markers of plant performance. Metabolomics 12: 158
  • Gascuel, Q., Buendia, L., Pecrix, Y., Blanchet, N., Muños, S., Vear, F., Godiard, L. (2016) RXLR and CRN effectors from the sunflower downy mildew pathogen Plasmopara halstedii induce hypersensitive-like responses in resistant sunflower lines. Front Plant Sci. doi: 10.3389/fpls.2016.01887
  • Louarn, J., Boniface, M.C., Pouilly, N., Velasco, L., Pérez-Vich, B., Vincourt, P., Muños, S. (2016) Sunflower Resistance to Broomrape (Orobanche cumana) Is Controlled by Specific QTLs for Different Parasitism Stages. Front Plant Sci. doi: 10.3389/fpls.2016.00590
  • Mayjonade, B., Gouzy, J., Donnadieu, C., Pouilly, N., Marande, W., Callot, C., Langlade, N., Muños, S. (2016) Extraction of high-molecular-weight genomic DNA for the long-read sequencing of single molecules. BioTechniques 61: 203–205
  • Nicolas, S.D., Péros, J.P., Lacombe T., Launay, A., Le Paslier, M.C., Bérard, A., Mangin, B., Valière, S., Martins, F., Le Cunff, L., et al (2016) Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies. BMC Plant Biology 16: 74
  • Rabier, C.E., Barre, P., Asp, T., Charmet, G., Mangin, B. (2016) On the Accuracy of Genomic Selection. PLOS ONE 11: e0156086
  • Andrianasolo, F.N., Casadebaig, P., Langlade, N., Debaeke, P., Maury, P. (2016) Effects of plant growth stage and leaf aging on the response of transpiration and photosynthesis to water deficit in sunflower. Functional Plant Biology 43(8) · June 2016
  • Khoufi, S., Pouilly, N., Muños, S., Bérard, A., Fayçal BJ, Vincourt, P., Brunel, D. (2016) Genetic Diversity and Core Collection Constitution for Subsequent Creation of New Sunflower Varieties in Tunisia. Helia. doi: 10.1515/helia-2016-0002
  • Gélard, W., Burger, P., Casadebaig, P., Langlade, N., Debaeke, P., Devy, M., Herbulot, A. (2016) 3D plant phenotyping in sunflower using architecture-based organ segmentation from 3D point clouds. 5th International Workshop on Image Analysis Methods for the Plant Sciences


  • Marchand, G., Huynh-Thu, V. A., Kane, N., Arribat, S., Varès, D., Rengel, D., Balzergue, S., Rieseberg, L., Vincourt, P., Geurts, P., Vignes, M. and Langlade, N. B. (2014) Bridging physiological and evolutionary time scales in a gene regulatory network.  New Phytologist 203(2):685-96. doi: 10.1111/nph.12818. Epub 2014 May 2


  • Marchand, G., Mayjonade, B., Varès,D., Blanchet, N., Boniface, M.C., Maury, P., Andrianasolo Nambinina F., Burger, P., Debaeke, P., Casadebaig, P., Vincourt, P., Langlade N.B. (2013) A biomarker based on gene expression indicates plant water status in controlled and natural environments. Plant Cell and Environment DOI:10.1111/pce.12127  
  • Cadic, E.,Coque, M., Vear, F., Grezes-Besset, B., Pauquet, J., Piquemal, J., Lippi, Y., Blanchard, P., Romestant, M., Pouilly, N., Rengel, D., Gouzy, J., Langlade, N., Mangin, B., Vincourt, P. (2013) Combined linkage and association mapping of flowering time in Sunflower (Helianthus annuus L.) Theor.Appl.Genet. DOI: 10.1007/s00122-013-2056-2


  • Rengel, D., Arribat, S., Pierre Maury, P., Martin-Magniette, M.L., Hourlier, T., Laporte, M., Varès, D., Carrère, C., Grieu, P., Balzergue, S., Gouzy, J., Vincourt, P., Langlade, N.B (2012) A Gene-Phenotype Network Based on Genetic Variability for Drought Responses Reveals Key Physiological Processes in Controlled and Natural Environments. PLoS ONE 7(10): e45249. doi:10.1371/journal.pone.0045249
  • Kane, N. C., Burke, J. M., Marek, L., Seiler, G., Vear, F., Baute, G., Knapp, S. J., Vincourt, P. and Rieseberg, L. H. (2012), Sunflower genetic, genomic and ecological resources. Molecular Ecology Resources. doi: 10.1111/1755-0998.12023
  • Merah, O., Langlade, N., Alignan, M., Roche, J., Pouilly, N., Lippi, Y., Vear, F., Cerny, M., Bouniols, A., Mouloungui, Z., Vincourt, P. (2012) Genetic analysis of phytosterol content in sunflower seeds. Theor.Appl.Genet. DOI: 10.1007/s00122-012-1937-0 
  • Vincourt, P., As Sadi, F., Bordat, A., Langlade, N., Gouzy, J., Pouilly, N., Lippi, Y., Serre, F., Godiard, L., Tourvieille de Labrouhe, D., Vear, F. (2012) Consensus mapping of major resistance genes and independent QTL for quantitative resistance to sunflower downy mildew Theor.Appl.Genet. DOI: 10.1007/s00122-012-1882-y  
  • Haddadi, P., Ebrahimi, A., Langlade, N.B., Yazdi-samadi, B., Berger, M., Calmon, A., Naghavi, M.R., Vincourt, P., Sarrafi, A. (2012) Genetic dissection of tocopherol and phytosterol in recombinant inbred lines of sunflower through quantitative trait locus analysis and the candidate gene approach. Molecular Breeding 29(3):


  • As-Sadi, F., Carrere, S., Gascuel, Q., Hourlier, T., Rengel, D., Le Paslier, M-C, Bordat, A., Boniface, M-C., Brunel, D., Gouzy, J., Godiard, L.*, Vincourt, P.* (2011). Transcriptomic analysis of the interaction between Helianthus annuus and its obligate parasite Plasmopara halstedii shows single nucleotide polymorphisms in CRN sequences. BMC Genomics 12:498.
  • Bazin, J., Langlade, N., Vincourt, P., Arribat, S., Balzergue, S., El-Maarouf-Bouteau, H., Bailly, C. (2011) Targeted mRNA Oxidation Regulates Sunflower Seed Dormancy Alleviation during Dry After-Ripening: PLANT CELL  23 (6) : 2196-2208  DOI: 10.1105/tpc.111.086694  
  • Kane, N.C., Gill, N., King, M.G., Bowers, J.E., Berges, H., Gouzy, J., Bachlava, E., Langlade, N.B., Lai, Z., Stewart, M., Vincourt, P., Knapp, S.J., Rieseberg, L.H. (2011) Progress towards a reference genome for sunflower. Botany 89: 429–437 


  • Haddadi, P., Yazdi-Samadi, B., Langlade, N.B., Naghavi, M.R., Berger, M., Kalantari,  A., Calmon, A., Maury, P., Vincourt, P., Sarrafi, A. (2010) Genetic control of protein, oil and fatty acids content under partial drought stress and late sowing conditions in sunflower (Helianthus annuus). African Journal of Biotechnology 9 (40) :6768-6782


  • Vear, F., Serre, F., Jouan-Dufournel, I.,Bert, P.F., Roche, S., Walser, P., de Labrouhe, D.T., Vincourt, P. (2008)  Inheritance of quantitative resistance to downy mildew (Plasmopara halstedii) in sunflower (Helianthus annuus L.)  EUPHYTICA  164 (2) : 561-570  DOI: 10.1007/s10681-008-9759-5